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HIPAA-Compliant Payment Processing for Telehealth: What Providers Need to Know

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Virtual care is booming — but if your payment processor isn’t HIPAA-compliant, your entire business could be at risk.

In today’s healthcare landscape, telehealth is a cornerstone of modern medicine, expanding access to care across state lines, time zones, and even socioeconomic barriers. This includes both medical and mental health services. One thing to keep in mind is that behind every video consult or therapy session lies a layer of trust — and that includes how you handle your patient’s payments.

Why Payment Processing in Telehealth Is Different

Telehealth providers aren’t just managing copays or subscription services — they’re handling Protected Health Information (PHI), often in the same tools used to collect and store payments. This means that payment processing must be more than just fast and functional — it must be HIPAA-compliant.

Unlike traditional retailers or healthcare clinics, virtual providers face:

  • Increased fraud risk due to remote transactions

  • Confusion around PCI vs. HIPAA compliance

  • Complexities with recurring billing and flexible payments like FSA/HSA

  • Legal exposure when their tools store patient information without the right safeguards

Not All Processors Are HIPAA-Compliant–And That’s a Problem

Here’s the kicker: Most payment processors are not required to be HIPAA-compliant. Many won’t sign a Business Associate Agreement (BAA) — the document that makes them legally accountable for protecting PHI.

And while PCI compliance covers financial security, it doesn’t account for healthcare data. If your processor doesn’t understand HIPAA, they could:

  • Store patient information without safeguards

  • Integrate with third-party tools that violate regulations

  • Leave you vulnerable in the event of a breach

Compliance isn’t a checkbox. It’s a contract of trust between you and your patients.

Unique Worries Telehealth Providers Face

Let’s get real. If you’re a mental health provider, an addiction recovery service, or a women’s health platform, you’re probably asking:

  • “Can I safely offer flexible payments without storing PHI?”

  • “What happens if my billing platform isn’t HIPAA-compliant?”

  • “How do I stay compliant when offering recurring services across multiple states?”

These aren’t just billing questions. They’re legal and ethical concerns — and they deserve better answers.

What You Might Not Know About HIPAA and Payment Processing

  1. HIPAA compliance isn’t automatic — even for healthcare apps. Many EHRs integrate with processors that aren’t compliant.

  2. A processor must sign a BAA to be truly HIPAA-compliant. Without it, the legal responsibility falls entirely on your practice.

  3. Text-to-pay, invoicing tools, or portals might violate HIPAA. If they store or transmit PHI, you need secure systems in place.

  4. FSA/HSA cards require special configuration. Not all processors support them, especially in virtual environments.

  5. Chargebacks in telehealth are rising. A HIPAA-conscious partner helps you handle disputes while protecting patient privacy.

Patients trust you with their most vulnerable moments — and that trust extends to how you handle their payments. Don’t leave your telehealth practice exposed. Work with a payment partner that understands the stakes, signs the BAA, and supports you with secure, seamless solutions designed for virtual care.

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